[GSAS-II] [EXTERNAL] GSAS-II on Linux

Miguel A. Camblor macamblor at icmm.csic.es
Mon Aug 4 09:07:46 CDT 2025


  Dear Yuanpeng, Carlo, Brian and Alexander

Thanks a lot to you all for your help.

Following Yuanpeng's procedure I got the program working. For the  
current version, 5818, the data tab under phase didn't render well and  
I could not input any data there. However, after going back to the  
previous version (5817) I could. What I can still not do is to draw  
the structure (it doesn't even take the background color selected). I  
have a lot of Gtk-warnings.

Following Carlo's procedure when I try sudo python3 gitstrap.py the  
system says it needs matplotlib and OpenGL. But when I try to install  
those I got ERROR: No matching distribution found for OpenGL

Alexander noticed that while he uses an old version of GSAS-II (5799,  
which I can't reach) during instalation numpy got upgraded to version  
2.2.6, while mine is 1.26.4. When I follow Yuanpeng's procedure I got  
numpy updated to 2.3.2, so I think this might be a good clue to the  
problem.

I will keep testing GSAS-II in my system.

Thanks again to all.
Miguel

"Zhang, Yuanpeng" <zhangy3 at ornl.gov> escribió:

> Hi Miguel,
>    
>   I was walking through the installation of GSAS-II on my Ubuntu  
> machine as created the following blog post,
>    
>   https://urldefense.us/v3/__https://iris2020.net/2025-08-01-gsasii_on_linux/__;!!G_uCfscf7eWS!YcH4m3HebQYUf6-qjgbxGkZpRVk1Pi9N5edx4vISVUB77d51qfEJrhAbbgsB1bBFeTEKaZK_EEv6Wg7aOhQX5GRVWQ$ 
>    
>   to cover literally all my trials until getting it working. I hope  
> that will be somewhat helpful.
>    
>   Cheers,
>   Yuanpeng
>
>     
>
>    -- 
>
>     
>
>    DR. YUANPENG ZHANG
>
>    Neutron Scattering Scientist
>
>    Spallation Neutron Source
>
>     
>
>    OAK RIDGE NATIONAL LABORATORY
>
>    1 bethel valley road, Oak Ridge, TN 37830, US
>
>    Mobile: +1(865)-335-4818
>
>    Email: _zhangy3 at ornl.gov_ | Web: _https://urldefense.us/v3/__https://me.iris-home.net___;!!G_uCfscf7eWS!YcH4m3HebQYUf6-qjgbxGkZpRVk1Pi9N5edx4vISVUB77d51qfEJrhAbbgsB1bBFeTEKaZK_EEv6Wg7aOhRpTbp19w$ 
>
>          FROM: GSAS-II <gsas-ii-bounces at aps.anl.gov> on behalf of  
> Miguel A. Camblor via GSAS-II <gsas-ii at aps.anl.gov>
> DATE: Friday, August 1, 2025 at 05:14
> TO: gsas-ii at aps.anl.gov <gsas-ii at aps.anl.gov>
> SUBJECT: [EXTERNAL] [GSAS-II] GSAS-II on Linux
>  
>                This Message Is From an External Sender
>       This email was sent from a non-ORNL address. If suspicious,  
> use the Report Phish button in Outlook.
>
>       
>
>                This Message Is From an External Sender
>       This message came from outside your organization.
>
>       
>
>     Dear all
>
> I am trying to use GSAS-II on my Linux Debian 11 but I get  
> segmentation fault errors that stop it. I am using the latest version
>
>   Python:     3.11.8  from /home/msax/miniconda3/envs/gsas2env/bin/python.
>   wx:         4.2.3  
>   matplotlib: 3.10.3  
>   numpy:      1.26.4  
>   scipy:      1.16.0  
>   OpenGL:     3.1.9  
>   Image:      11.3.0 (PIL or Pillow)
>   Platform:   linux 64bit x86_64
>   Max threads:4
>   GSAS-II:    5818/v5.5.0 posted 31-Jul-25 16:38 (no new updates) [07d17120]
>
> If anyone is successfully using GSAS-II on linux, please let me know  
> which distribution or solution works.
>
> Cheers
> Miguel
>
>  
>     Miguel A. Camblor
> Institute of Materials Science of Madrid
> Spanish National Research Council-CSIC
> Sor Juana Inés de la Cruz, 3
> Cantoblanco, 28049 Madrid, Spain.
> TEL: +34 91 334 9037
> FAX: +34 91 372 0623
> /Nanostructured Hybrid, Biohybrid & and Porous Materials[1]/
> /Funk & Jazz & Science[2]/
> /Google Scholar Profile[3]/



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